Metadata and data for https://doi.org/10.1128/AEM.03128-15

Version 7 2017-01-12, 08:58

Version 6 2016-12-12, 16:30

Version 5 2016-01-05, 03:30

Version 4 2015-10-17, 23:57

Version 3 2015-10-17, 23:57

Version 2 2015-09-02, 05:21

Version 1 2015-09-02, 05:15

dataset

posted on 2017-01-12, 08:58 authored by Shane HogleShane Hogle

Publication reference:

Hogle SL, Cameron Thrash J, Dupont CL, Barbeau KA. Trace metal acquisition by marine heterotrophic bacterioplankton with contrasting trophic strategies. Appl Environ Microbiol. 2016. 82:1613–24.

File Descriptions:

Supplemental_material.pdf - Supplemental methods, results, tables, figures, and references

Dataset1.xlsx - Genome features, Genome completion, environmental characteristics, transporter abundance

Dataset2.xlsx - CDD/PFAM/COGs used to identify metal transporters

Dataset3.xlsx - Predicted Fur boxes

Dataset4.xlsx - COGs used for phylogenetic tree construction

Dataset5.xlsx - TonB dependent receptor genome neighborhoods and Markov Clustering parameters

Dataset6.xlsx - Particle associated versus free-living lifestyle assignments and references used to make assignments

scripts - folder with scripts and markdown used to do analysis

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Keywords

Marine environments microbiology Roseobacters sar11 Comparative genomics Oceanography Bioinformatics Ecology Microbiology

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MIT

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