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GriffithsAllLinkTypes.Rdata (79.54 kB)

Rdata file of all links in the summary network.

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posted on 2014-03-29, 18:36 authored by Emily GriffithsEmily Griffiths

Different versions of the network can be created by excluding certain link types using the Evidence column, and, in reference to the node file, by collapsing node names following a biological hierarchy.

The contents of each column are as follows:

Resource - First node. Where applicable this is the node being consumed.
Consumer - Second node. Where applicable this is the node consuming the resource.
Interaction.name - Where reported this is nature of the biological process conveyed by the link.
Evidence - The type of link, whether there is an identified process (Mechanism), an association (Pattern), or just two simultaneous nodes (Cooccurrence).
Authors - Surname of the first author of the publication.
Year - Year of publication.
Journal - Name of the journal in which it was published.
Abstract.only - Whether or not (Y or N) I had access to the full text of the publication.
Methods - The type of research reported in the publication.
Notes - Rough description of what the publication reported.
Max.parasites.per.person - Most parasites reported in a person in that publication.
Aggregated.Resource - Renamed node corresponding to the Resource column. Other forms of aggregation are possible by reference to the node file.
Aggregated.Consumer - Renamed node corresponding to the Consumer column. Other forms of aggregation are possible by reference to the node file.
Publication - Combination of Authors, Year, and Journal to identify each unique publication.

 

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