TY - DATA T1 - A ChIP-seq test dataset PY - 2012/11/26 AU - Russell Neches AU - Marc Facciotti AU - Elizabeth G. Wilbanks AU - Phillip M. Seitzer UR - https://figshare.com/articles/dataset/A_ChIP-seq_test_dataset/98106 DO - 10.6084/m9.figshare.98106.v1 L4 - https://ndownloader.figshare.com/files/3066767 L4 - https://ndownloader.figshare.com/files/3066770 L4 - https://ndownloader.figshare.com/files/3066776 KW - chip KW - ChIP-seq KW - sequencing KW - dna KW - chromatin KW - immunoprecipitation KW - Halobacterium KW - salinarum KW - indel KW - transposon KW - plasmid KW - UCDavis KW - Biochemistry KW - Bioinformatics KW - Cell Biology KW - Genetics N2 - This is a testing dataset for ChIP-seq (chromatin Immunoprecipitation sequencing) peak callers. It was made from a his-tagged tfbD pulldown in Halobacterium salinarum, sequenced on the Illumina GAII. The reads were mapped using bowtie to a cut-down chromosome and one plasmid, and unmapped reads were discarded.    This is a fairly challenging dataset. It contains several genomic features that can potentially break peak-calling algorithms, including transposons, copy number variations, and indels with resepect to the reference genome used. ER -